PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06951
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 233aa    MW: 26361.1 Da    PI: 8.4399
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06951genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.62.4e-36161241109
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
               lppGfrFhP+d e++ +yL +kv +k++++ +v++evd+ k+ePw+Lp++v+ +eke yfFs++d ky++g ++nra+++gyWkatgkdke++   +++ +
  EMT06951  16 LPPGFRFHPKDMEIIIFYLIPKVLKKDFDT-TVVREVDLKKYEPWNLPNEVNMGEKERYFFSQKDLKYPNGIQTNRAMNAGYWKATGKDKEIILPpTKSPI 115
               79***************************9.99***************99999****************************************9978889* PP

       NAM 101 glkktLvfy 109
               g+kktL+  
  EMT06951 116 GMKKTLMHA 124
               ******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3811125IPR003441NAC domain
PROSITE profilePS5100533.98216169IPR003441NAC domain
PfamPF023655.4E-1617124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MASHLKVQQQ KQKPNLPPGF RFHPKDMEII IFYLIPKVLK KDFDTTVVRE VDLKKYEPWN  60
LPNEVNMGEK ERYFFSQKDL KYPNGIQTNR AMNAGYWKAT GKDKEIILPP TKSPIGMKKT  120
LMHAIEAGSS MMGSVALPMM NNHYFGNHHH QLMVAQPQSS MSFNNHTQQQ QMMHMSADQG  180
FMVGVDPRSG SLCIVSQEDV MTGPSNNNDG NGGASTSNEM SSVNMGMDDI WNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-3221251124NAC domain-containing protein 19
4dul_A1e-3221251124NAC domain-containing protein 19
1ut7_B1e-3221251124NO APICAL MERISTEM PROTEIN
1ut7_A1e-3221251124NO APICAL MERISTEM PROTEIN
1ut4_B1e-3221251124NO APICAL MERISTEM PROTEIN
1ut4_A1e-3221251124NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8197611e-126FR819761.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC009 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8AQY41e-176M8AQY4_AEGTA; Protein CUP-SHAPED COTYLEDON 1
STRINGMLOC_57427.19e-64(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.11e-43NAC family protein